Coding

Part:BBa_K1179016

Designed by: Nelson Hall   Group: iGEM13_MIT   (2013-09-15)


L7Ae (Transcriptional level repressor)

L7Ae is a transcriptional level repressor which targets RNA K-turns.



2019 SYSU-CHINA's characterization

SYSU-CHINA added some quantitative experimental characterization data on the L7Ae protein.
L7Ae is a protein targets RNA K-turn. We characterizated L7Ae and constructed an L7Ae mutation(L7AeO,BBa_3179001) to study the suppression efficiency of the L7Ae-Kturn System.
T-SYSU-CHINA-L7AeO mutate site.jpg
The result shows that the mutation couldn’t work normally but still functions in high concentration. Meanwhile, the 1000ng/ml L7Ae can depress the translation of mRNA with a efficiency of 84%.

L7AeO.jpg


T-SYSU-CHINA-L7Ae-Kturn.jpg



Now the sequence analysis and computer modeling have shown the predicted structure of L7Ae. We can easily see that there are some α-helixes in L7Ae, and one of them is the bidding site.

Figure 3: L7Ae structure with K-turn from PDB


Cytotoxicity test

SYSU-CHINA tested the cytotoxicity of L7Ae, which was previously considered to be slightly cytotoxic, but the opposite result was found in our experiments.Neither L7Ae nor its mutants showed significant cytotoxicity.

T-SYSU-CHINA-cell experiment.jpg


Usage and Biology

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
Parameters
efficiency